| Year |
Title |
Publisher |
| 2023 |
|
|
| - |
| |
Genome-wide analyses of early-onset acute myocardial infarction identify 29 novel loci by whole genome sequencing |
Human Genetics |
| 2022 |
|
Current Biology |
| The Kiss of Death: Serratia marcescens Antibacterial Activities against Staphylococcus aureus Requires Both de novo Prodigiosin Synthesis and Direct Contact |
ASM Journals |
| LT1, an ONT long-read-based assembly scaffolded with Hi-C data and polished with short reads |
Gigabyte |
| KOREF_S1: phased, parental trio-binned Korean reference genome using long reads and Hi-C sequencing methods |
Giga Science |
| - |
| 2021 |
Regional TMPRSS2 V197M allele frequencies are correlated with COVID-19 case fatality rates |
Molecules and Cells |
| Identifying molecular targets for reverse aging using integrated network analysis of transcriptomic and epigenomic changes during aging |
Scientific reports |
| Comparative analysis of 7 short-read sequencing platforms using the Korean Reference Genome: MGI and Illumina sequencing benchmark for whole-genome sequencing |
Giga Science |
| Welfare Genome Project: A Participatory Korean Personal Genome Project With Free Health Check-Up and Genetic Report Followed by Counseling |
frontiers in Genetics |
| Polygenic risk score validation using Korean genomes of 265 early-onset acute myocardial infarction patients and 636 healthy controls |
PLoS One |
| Complete genome sequence and bioinformatics analysis of nine Egyptian females with clinical information from different geographic regions in Egypt |
Gene |
| |
|
|
| 2020 |
Genomic Adaptations and Evolutionary Histroy of the Extinct Scimitar-Toothed Cat, Homotherium latidens |
Cell Press |
| The whale shark genome reveals how genomic and physiological properties scale with body size |
PNAS |
| Korean Genome Project: 1094 Korean personal genomes with clinical information |
ScienceAdvances |
| The Origin and Composition of Korean Ethnicity Analyzed by Ancient and Present-Day Genome Sequences |
Genome Biology and Evolution |
| Decoding a Highly Mixed Kazakh Genome |
Human Genetics |
| Whole Genome Analysis of the Red-Crowned Crane Provides Insight into Avian Longevity |
Molecules and Cells |
| |
|
|
| 2019 |
Brca2 Abrogation Engages With the Alternative Lengthening of Telomeres via Break-Induced Replication |
The FEBS Journal |
| Chromosome-scale Assembly Comparison of the Korean Reference Genome KOREF From PromethION and PacBio With Hi-C Mapping Information |
GigaScience |
| Combinatory Analysis of Cell-free and Circulating Tumor Cell DNAs Provides More Variants for Cancer Treatment |
Anticancer Research |
| Comparison of Exercise Electrocardiography and Magnetocardiography for Detection of Coronary Artery Disease Using ST-segment Fluctuation Score |
IOS Press |
| Depression and Suicide Risk Prediction Models Using Blood-Derived Multi-Omics Data |
Translational Psychiatry |
| The Draft Genome of an Octocoral, Dendronephthya Gigantea |
Genome Biology and Evolution |
| The Galleria Mellonella Hologenome Supports Microbiota-Independent Metabolism of Long-Chain Hydrocarbon Beeswax |
Cell Reports |
| The Genome of the Giant Nomura's Jellyfish Sheds Light on the Early Evolution of Active Predation |
BMC Biology |
| Investigation of Hanwoo-specific Structural Variations Using Whole-Genome Sequencing Data |
Genes & Genomics |
| Raptor Genomes Reveal Evolutionary Signatures of Predatory and Nocturnal Lifestyles |
Genome Biology |
| Sequencing and Analysis of the Whole Genome of Indian Gujarati Male |
Genomics |
| |
|
|
| 2018 |
Genomic Analysis Reveals Secondary Glioblastoma After Radiotherapy in a Subset of Recurrent Medulloblastomas |
Acta Neuropathologica |
| Genomic Structure of the Native Inhabitants of Peninsular Malaysia and North Borneo Suggests Complex Human Population History in Southeast Asia |
Human Genetics |
| Grading System for Periodontitis by Analyzing Levels of Periodontal Pathogens in Saliva |
PLoS One |
| KoVariome: Korean National Standard Reference Variome Database of Whole Genomes With Comprehensive SNV, Indel, CNV, and SV Analyses |
Scientific Reports |
| Magnetocardiography Scoring System to Predict the Presence of Obstructive Coronary Artery Disease |
Clinical Hemorheology and Microcirculation |
| Whole Genome Sequencing and Bioinformatics Analysis of Two Egyptian Genomes |
Gene |
| |
|
|
| 2017
|
Analysis of the FGF Gene Family Provides Insights Into Aquatic Adaptation in Cetaceans |
Scientific Reports |
| Corrigendum: An Ethnically Relevant Consensus Korean Reference Genome Is a Step Towards Personal Reference Genomes |
Nature Communications |
| Genome-wide Data From Two Early Neolithic East Asian Individuals Dating to 7700 Years Ago |
ScienceAdvances |
| Myotis Rufoniger Genome Sequence and Analyses: M. Rufoniger's Genomic Feature and the Decreasing Effective Population Size of Myotis Bats |
PLoS One |
| Perspectives Provided by Leopard and Other Cat Genomes: How Diet Determined the Evolutionary History of Carnivores, Omnivores, and Herbivores |
BMB Reports |
| |
|
|
| 2016 |
An Adaptive Detection Method for Fetal Chromosomal Aneuploidy Using Cell-Free DNA From 447 Korean Women |
BMC Medical Genomics |
| Comparison of Carnivore, Omnivore, and Herbivore Mammalian Genomes With a New Leopard Assembly |
Genome Biology |
| Comparison of Two High-Throughput Semiconductor Chip Sequencing Platforms in Noninvasive Prenatal Testing for Down Syndrome in Early Pregnancy |
BMC Medical Genomics |
|
An Ethnically Relevant Consensus Korean Reference Genome Is a Step Towards Personal Reference Genomes |
Nature Communications |
| The Genetics of an Early Neolithic Pastoralist From the Zagros, Iran |
Scientific Reports |
| Genomes of Coral Dinoflagellate Symbionts Highlight Evolutionary Adaptations Conducive to a Symbiotic Lifestyle |
Scientific Reports |
| RNA-Seq Analysis Reveals New Evidence for Inflammation-Related Changes in Aged Kidney |
Oncotarget |
| Short-term Calorie Restriction Ameliorates Genomewide, Age-Related Alterations in DNA Methylation |
Aging Cell |
| |
|
|
| 2015 |
Ancient Ethiopian Genome Reveals Extensive Eurasian Admixture Throughout the African Continent |
Science |
| Characterization of cetacean Numt and its application into cetacean phylogeny |
Genes & Genomics |
| The First Whole Genome and Transcriptome of the Cinereous Vulture Reveals Adaptation in the Gastric and Immune Defense Systems and Possible Convergent Evolution Between the Old and New World Vultures |
Genome Biology |
| Genome-wide Analysis of DNA Methylation Before-And After Exercise in the Thoroughbred Horse With MeDIP-Seq |
Molecules and Cells |
| Genomic Legacy of the African Cheetah, Acinonyx Jubatus |
Genome Biology |
| HEpD: A Database Describing Epigenetic Differences Between Thoroughbred and Jeju Horses |
Gene |
| HExDB: a database for epigenetic changes occurring after horse exercise |
Genes & Genomics |
| Insights Into the Evolution of Longevity From the Bowhead Whale Genome |
Cell Reports |
| Profiling Age-Related Epigenetic Markers of Stomach Adenocarcinoma in Young and Old Subjects |
Cancer Informatics |
| SLC15A2 Genomic Variation Is Associated With the Extraordinary Response of Sorafenib Treatment: Whole-Genome Analysis in Patients With Hepatocellular Carcinoma |
Oncotarget |
| Whole Genome Sequencing of an Ethnic Pathan (Pakhtun) From the North-West of Pakistan |
BMC Genomics |
| |
|
|
| 2014 |
The Feasibility Study of Non-Invasive Fetal Trisomy 18 and 21 Detection With Semiconductor Sequencing Platform |
PLoS One |
| Genome-wide Analysis of DNA Methylation Patterns in Horse |
BMC Genomics |
| Genomic Profile Analysis of Diffuse-Type Gastric Cancers |
Genome Biology |
| Identification and Characterization of MicroRNAs in Normal Equine Tissues by Next Generation Sequencing |
PLoS One |
| Minke Whale Genome and Aquatic Adaptation in Cetaceans |
Nature Genetics |
| New Lung Cancer Panel for High-Throughput Targeted Resequencing |
Genomics & Informatics |
| PPP1R1B-STARD3 Chimeric Fusion Transcript in Human Gastric Cancer Promotes Tumorigenesis Through Activation of PI3K/AKT Signaling |
Oncogene |
| Whole-genome Analysis of a Patient With Early-Stage Small-Cell Lung Cancer |
Pharmacogenomics |
| Comprehensive Genome- And Transcriptome-Wide Analyses of Mutations Associated With Microsatellite Instability in Korean Gastric Cancers |
BMC Genomics |
| Whole Genome Sequence and Analysis of the Marwari Horse Breed and Its Genetic Origin |
BMC Genomics |
| |
|
|
| 2013 |
Comprehensive Genome- And Transcriptome-Wide Analyses of Mutations Associated With Microsatellite Instability in Korean Gastric Cancers |
Genome Research |
| The Genetic Basis of White Tigers |
Current Biology |
| iAnn: An Event Sharing Platform for the Life Sciences |
Bioinformatics |
| Peeling Back the Evolutionary Layers of Molecular Mechanisms Responsive to Exercise-Stress in the Skeletal Muscle of the Racing Horse |
DNA Research |
| The Tiger Genome and Comparative Analysis With Lion and Snow Leopard Genomes |
Nature Communications |
| Whole genome comparison of donor and cloned dogs |
Scientific Reports |
| |
|
|
| 2012 |
De Novo Transcriptome Sequencing of Momordica Cochinchinensis to Identify Genes Involved in the Carotenoid Biosynthesis |
Plant Molecular Biology |
| Genetic dating indicates that the Asian–Papuan admixture through Eastern Indonesia corresponds to the Austronesian expansion |
PNAS |
| Low Budget Analysis of Direct-To-Consumer Genomic Testing Familial Data |
F1000Research |
| MetaBase--the Wiki-Database of Biological Databases |
Nucleic Acids Research |
| A Public Resource Facilitating Clinical Use of Genomes |
PNAS |
| Whole transcriptome analyses of six thoroughbred horses before and after exercise using RNA-Seq |
BMC Genomics |
| |
|
|
| 2011 |
BetaDock: Shape-Priority Docking Method Based on Beta-Complex |
Journal of Biomolecular Structure and Dynamics |
| Gene Expression Pattern in Transmitochondrial Cytoplasmic Hybrid Cells Harboring Type 2 Diabetes-Associated Mitochondrial DNA Haplogroups |
PLoS One |
| Identification of Close Relatives in the HUGO Pan-Asian SNP Database |
PLoS One |
| Liverome: A Curated Database of Liver Cancer-Related Gene Signatures With Self-Contained Context Information |
BMC Genomics |
| Mutational Hotspots in the Mitochondrial Genome of Lung Cancer |
Biochemical and Biophysical Research Communications |
| PanSNPdb: The Pan-Asian SNP Genotyping Database |
PLoS One |
| Population Genetic Structure of Peninsular Malaysia Malay Sub-Ethnic Groups |
PLoS One |
| |
|
|
| 2010 |
Alpha-glucosidase Folding During Urea Denaturation: Enzyme Kinetics and Computational Prediction |
Applied Biochemistry and Biotechnology |
| Differential Evolutionary Rates of Neuronal Transcriptome in Aplysia Kurodai and Aplysia Californica as a Tool for Gene Mining |
Journal of Neurogenetics |
| The Effect of Trifluoroethanol on Tyrosinase Activity and Conformation: Inhibition Kinetics and Computational Simulations |
Applied Biochemistry and Biotechnology |
| Gene Flow Between the Korean Peninsula and Its Neighboring Countries |
PLoS One |
| Kinetics of Zn(2+)-induced Brain Type Creatine Kinase Unfolding and Aggregation |
Applied Biochemistry and Biotechnology |
| PDBWiki: Added Value Through Community Annotation of the Protein Data Bank |
Database |
| A Proposal for the Revision of Molecular Boundary Typology |
Journal of Biomolecular Structure and Dynamics |
| Protein Network Prediction and Topological Analysis in Leishmania Major as a Tool for Drug Target Selection |
BMC Bioinformatics |
| Sphericity of a Protein via the Beta-Complex |
Journal of Molecular Graphs and Modelling |
| Structural Analysis and Inhibitory Kinetics of Brain Type Creatine Kinase by Sodium Dodecyl Sulfate |
Applied Biochemistry and Biotechnology |
| Systematic Cyanobacterial Membrane Proteome Analysis by Combining Acid Hydrolysis and Digestive Enzymes With Nano-Liquid chromatography-Fourier Transform Mass Spectrometry |
Journal of Chromatography A |
| Whole-genome Sequencing and Intensive Analysis of the Undomesticated Soybean (Glycine Soja Sieb. And Zucc.) Genome |
PNAS |
| |
|
|
| 2009 |
BioBarcode: a general DNA barcoding database and server platform for Asian biodiversity resources |
BMC Genomics |
| COMUS: Clinician-Oriented locus-specific MUtation detection and deposition System |
BMC Genomics |
| DNA microarray analyses and interactomic predictions for atopic dermatitis |
Journal of Dermatological Science |
| Dysregulated genes of extrinsic type of atopic dermatitis: 34K microarray and interactomic analyses |
Journal of Dermatological Science |
| The effects of acrylamide on brain creatine kinase: inhibition kinetics and computational docking simulation |
International Journal of Biological Macromolecules |
| The first Korean genome sequence and analysis: full genome sequencing for a socio-ethnic group |
Genome Research |
| Gevab: a prototype genome variation analysis browsing server |
BMC Bioinformatics |
| The Korean Bird Information System (KBIS) through open and public participation |
BMC Bioinformatics |
| Mapping human genetic diversity in Asia |
Science |
| MitoInteractome: mitochondrial protein interactome database, and its application in 'aging network' analysis |
BMC Genomics |
| MitoVariome: a variome database of human mitochondrial DNA |
BMC Genomics |
|
PDbase: a database of Parkinson's disease-related genes and genetic variation using substantia nigra ESTs |
BMC Genomics |
| Planning the human variome project: the Spain report |
Human Mutation |
| Profiling the dysregulated genes of keratinocytes in atopic dermatitis patients: cDNA microarray and interactomic analyses |
Journal of Dermatological Science |
| PutidaNET: interactome database service and network analysis of Pseudomonas putida KT2440 |
BMC Genomics |
| ssSNPTarget: genome-wide splice-site Single Nucleotide Polymorphism database |
Human Mutation |
| Transcriptome and protein domain analyses in Aplysia nervous system with evolutionary implications |
Communicative & Integrative Biology |
| |
|
|
| 2008 |
Automatic synchronization and distribution of biological databases and software over low-bandwidth networks among developing countries |
Bioinformatics |
| Cyanobacterial hybrid kinase Sll0043 regulates phototaxis by suppressing pilin and twitching motility protein |
Journal of Microbiology |
| The effect of histidine residue modification on tyrosinase activity and conformation: inhibition kinetics and computational prediction |
Journal of Biomolecular Structure and Dynamics |
| Identification of gene-related Korean patents and construction of a database server for Korean patent sequences |
Biotechnology and Bioprocess Engineering |
| An integrated database-pipeline system for studying single nucleotide polymorphisms and diseases |
BMC Bioinformatics |
| An integrated Korean biodiversity and genetic information retrieval system |
BMC Bioinformatics |
| MassNet: a functional annotation service for protein mass spectrometry data |
Nucleic Acids Research |
| Personal Genomics, Bioinformatics, and Variomics |
Genomics & Informatics |
| Pocket extraction on proteins via the Voronoi diagram of spheres |
Journal of Molecular Graphs and Modelling |
| Predicting the interactome of Xanthomonas oryzae pathovar oryzae for target selection and DB service |
BMC Bioinformatics |
| Prediction and evaluation of protein-protein interaction in keratinocyte differentiation |
Biochemical and Biophysical Research Communications |
| Proteomic approaches to the analysis of atopic dermatitis and new insights from interactomics |
Proteomics - Clinical Applications |
| SNP@Promoter: a database of human SNPs (single nucleotide polymorphisms) within the putative promoter regions |
BMC Bioinformatics |
| Structural Bioinformatics Analysis of Disease-related Mutations |
Genomics & Informatics |
| SynechoNET: integrated protein-protein interaction database of a model cyanobacterium Synechocystis sp. PCC 6803 |
BMC Bioinformatics |
| Transcriptome analysis and identification of regulators for long-term plasticity in Aplysia kurodai |
PNAS |
| |
|
|
| 2007 |
Biological Object Downloader (BOD) Service for Easy Download and Management of Biological Databases |
Genetics & Informatics |
| CONSORF: a consensus prediction system for prokaryotic coding sequences |
Bioinformatics |
| Genomic distribution of simple sequence repeats in Brassica rapa |
Molecules and Cells |
| GS2PATH: a web-based integrated analysis tool for finding functional relationships using gene ontology and biochemical pathway data |
Bioinformation |
| Impact of transcriptional properties on essentiality and evolutionary rate |
Genetics |
| Multi-Resolution Protein Model |
Lecture Notes in Computer Science |
| |
|
|
| 2006 |
BioCC: An Openfree Hypertext Bio Community Cluster for Biology |
Genomics & Informatics |
| Developmental rate and ploidy of embryos produced by nuclear transfer with different activation treatments in cattle |
Animal Reproduction Science |
| Functional annotation and analysis of Korean patented biological sequences using bioinformatics |
Molecules and Cells |
| Localizome: a server for identifying transmembrane topologies and TM helices of eukaryotic proteins utilizing domain information |
Nucleic Acids Research |
| Parameter selection of pocket extraction algorithm using interaction interface |
Journal of Zhejiang University - SCIENCE A |
| Sequence-level analysis of the diploidization process in the triplicated FLOWERING LOCUS C region of Brassica rapa |
Plant Cell |
| |
|
|
| 2005 |
Architecture of basic building blocks in protein and domain structural interaction networks |
Bioinformatics |
| BioCovi: A Visualization Service for Comparative Genomics Analysis |
Genomics & Informatics |
| BioSubroutine: an Open Web Server for Bioinformatics Algorithms and Subroutines |
Genomics & Informatics |
| Comparative interactomics analysis of protein family interaction networks using PSIMAP (protein structural interactome map) |
Bioinformatics |
| Euclidean Voronoi diagrams of 3D spheres and applications to protein structure analysis |
Japan Journal of Industrial and Applied Mathematics |
| HExDB: Human EXon DataBase for Alternative Splicing Pattern Analysis |
Genomics & Informatics |
| A protein domain interaction interface database: InterPare |
BMC Informatics |
| PSIbase: a database of Protein Structural Interactome map (PSIMAP) |
Bioinformatics |
| |
|
|
| 2004 |
The association of Alu repeats with the generation of potential AU-rich elements (ARE) at 3' untranslated regions |
BMC Genomics |
| The Atom of Evolution |
Genomics & Informatics |
| High Correlation between Alu Elements and the Conversion of 3' UTR of mRNAs Processed Pseudogenes |
Genomics & Informatics |
| HPID: the Human Protein Interaction Database |
Bioinformatics |
| Large-scale co-evolution analysis of protein structural interlogues using the global protein structural interactome map (PSIMAP) |
Bioinformatics |
| Using convex hulls to extract interaction interfaces from known structures |
Bioinformatics |
| |
|
|
| 2003 |
Biological Network Evolution Hypothesis Applied to Protein Structural Interactome |
Genomics & Informatics |
| Challenges and New Approaches in Genomics and Bioinformatics |
Genomics & Informatics |
| Different activation treatments for successful development of bovine oocytes following intracytoplasmic sperm injection |
Zygote |
| Predicting Protein Interactions in Human by Homologous Interactions in Yeast |
Lecture Notes in Computer Science |
| Visualisation and graph-theoretic analysis of a large-scale protein structural interactome |
BMC Bioinformatics |
| Visualization and analysis of protein interactions |
Bioinformatics |
| |
|
|
| 2002 |
InterViewer: Dynamic Visualization of Protein-Protein Interactions |
Lecture Notes in Computer Science |
| Large scale statistical prediction of protein-protein interaction by potentially interacting domain (PID) pair |
Genomic Informatics |
| Protein Interactions in the Whole Human Genome |
Genome Informatics |
| Sequence similarity between stereocilin and otoancorin points to a unified mechanism for mechanotransduction in the mammalian inner ear |
BMC Cell Biology |
| |
|
|
| 2001 |
Conservation of protein interaction network in evolution |
Genome Informatics |
| A fully automatic evolutionary classification of protein folds: Dali Domain Dictionary version 3 |
Nucleic Acids Research |
| Generating protein interaction maps from incomplete data: application to fold assignment |
Bioinformatics |
| An Integrated Bioinformatic Search Server: Sequences, Structure, Interaction, and Function of Proteins (SSIF) Server |
Genome Informatics |
| Mapping protein family interactions: intramolecular and intermolecular protein family interaction repertoires in the PDB and yeast |
Journal of Molecular Biology |
| PartsList: a web-based system for dynamically ranking protein folds based on disparate attributes, including whole-genome expression and interaction information |
Nucleic Acids Research |
| Protein Classification Comparison Server |
Genome Informatics |
| |
|
|
| 2000 |
DaliLite workbench for protein structure comparison |
Bioinformatics |
| Estimating the significance of sequence order in protein secondary structure and prediction |
Bioinformatics |
| Fast assignment of protein structures to sequences using the intermediate sequence library PDB-ISL |
Bioinformatics |
| RSDB: representative protein sequence databases have high information content |
Bioinformatics |
| Sequence search algorithm assessment and testing toolkit (SAT) |
Bioinformatics |
| |
|
|
| 1998 |
DIVCLUS: an automatic method in the GEANFAMMER package that finds homologous domains in single- and multi-domain proteins |
Bioinformatics |
| Sequence comparisons using multiple sequences detect three times as many remote homologues as pairwise methods |
Journal of Molecular Biology |
| Structural assignments to the Mycoplasma genitalium proteins show extensive gene duplications and domain rearrangements |
PNAS |
| |
|
|
| 1997 |
Intermediate sequences increase the detection of homology between sequences |
Journal of Molecular Biology |
| |
|
|
| 1996 |
Protein structure prediction: playing the fold |
Trends in Biochemical Sciences |
| Update on protein structure prediction: results of the 1995 IRBM workshop |
Folding and Design |
| |
|
|
| 1995 |
Fold recognition and ab initio structure predictions using hidden Markov models and beta-strand pair potentials |
Proteins |
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